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        "draw.dgp",
        "draw.gp"
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      "topics": [
        "gp"
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      "title": "'python' environment initialization",
      "topics": [
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      "title": "Linked (D)GP emulator construction",
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        "lgp"
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    {
      "page": "mice",
      "title": "Locate the next design point for a (D)GP emulator or a bundle of (D)GP emulators using MICE",
      "topics": [
        "mice",
        "mice.bundle",
        "mice.dgp",
        "mice.gp"
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        "plot.dgp",
        "plot.gp",
        "plot.lgp"
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        "predict.lgp"
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